We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 454.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1022.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 455.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 557.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 459.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 547.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 635.4
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 681.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 478.4
Min RPKM: 41.7
Std RPKM: 91.4
Median RPKM: 222.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
478.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
471.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
464.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
427.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
417.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
407.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
405.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
388.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
383.0
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
367.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
356.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
350.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
349.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
339.7
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
339.2
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
335.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
325.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
325.4
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
325.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
324.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
319.4
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
317.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
313.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
312.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
306.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
293.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
292.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
291.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
290.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
290.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
286.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
286.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
283.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
282.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
280.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
279.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
277.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
273.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
272.6
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
271.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
266.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
264.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
260.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
253.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
252.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
250.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
250.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
247.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
241.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
240.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
240.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
238.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
237.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
233.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
227.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
226.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
226.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
224.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
224.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
222.5
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
222.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
221.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
219.7
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
218.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
215.5
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
208.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
208.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
208.1
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
206.2
GTEX-RU72-1426-SM-46MUF
50-59 years, female
205.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
202.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
201.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
201.1
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
199.1
GTEX-RN64-1826-SM-48FDV
50-59 years, male
194.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
190.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
189.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
188.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
188.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
188.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
185.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
184.5
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
184.4
GTEX-13112-1426-SM-5EGH8
50-59 years, male
183.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
183.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
183.3
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
180.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
180.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
176.3
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
168.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
163.7
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
157.7
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
157.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
155.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
153.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
153.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
152.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
152.1
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
148.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
148.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
145.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
144.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
143.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
143.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
140.8
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
139.0
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
138.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
134.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
120.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
110.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
109.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
101.0
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
90.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
67.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
63.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
61.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
58.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
52.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
41.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.