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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 7095
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 3864.3
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 4742.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 7279.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 5261.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 6762.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 6489.6
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 8621.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 5517.0
Min RPKM: 28.5
Std RPKM: 1291.0
Median RPKM: 1316.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
5517.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
5493.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
4807.6
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
4261.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
4261.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
4248.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
4243.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
4241.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
3974.4
GTEX-RN64-1826-SM-48FDV
50-59 years, male
3947.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
3776.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
3714.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
3628.9
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
3475.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
3383.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
3210.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
3210.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
3172.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
3071.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
3048.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
2997.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
2940.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
2923.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
2775.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
2766.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
2698.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
2677.0
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
2674.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
2642.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
2621.6
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
2500.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
2459.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
2448.2
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
2365.6
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
2332.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
2309.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
2263.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
2219.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
2169.0
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
2166.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
2154.6
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
2111.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
2014.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
2006.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
1967.7
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
1960.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
1955.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
1930.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
1726.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
1695.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
1667.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
1586.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
1577.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
1572.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
1559.0
GTEX-P78B-1326-SM-3P611
40-49 years, female
1543.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
1527.7
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
1520.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
1507.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
1316.8
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
1263.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
1203.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
1149.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
1134.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
1125.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
1108.3
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
1099.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
1030.3
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
994.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
985.6
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
963.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
940.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
872.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
868.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
830.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
809.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
803.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
802.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
791.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
748.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
731.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
715.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
687.9
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
686.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
661.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
652.4
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
647.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
640.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
628.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
616.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
601.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
597.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
595.3
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
586.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
576.3
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
529.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
525.3
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
521.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
487.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
479.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
472.6
GTEX-S32W-1926-SM-4AD63
50-59 years, female
460.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
453.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
441.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
428.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
387.1
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
383.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
369.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
354.1
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
350.4
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
307.0
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
301.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
289.6
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
254.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
223.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
193.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
143.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
132.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
28.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.