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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 205.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 122.1
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 132
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 115.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 124.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 161
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 143.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 162.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 362.0
Min RPKM: 54.2
Std RPKM: 49.9
Median RPKM: 157.6
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
362.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
346.1
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
340.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
313.2
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
262.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
250.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
248.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
245.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
237.5
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
236.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
228.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
227.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
223.3
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
221.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
219.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
218.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
217.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
217.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
212.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
209.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
207.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
200.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
200.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
199.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
199.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
199.2
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
199.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
195.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
189.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
187.2
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
186.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
182.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
181.9
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
181.4
GTEX-RN64-1826-SM-48FDV
50-59 years, male
181.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
177.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
177.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
176.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
176.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
174.5
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
171.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
171.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
171.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
171.0
GTEX-X261-1726-SM-4PQYT
50-59 years, male
169.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
169.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
169.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
169.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
169.0
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
168.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
167.6
GTEX-1399T-0826-SM-5IFES
60-69 years, male
167.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
165.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
164.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
162.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
161.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
160.3
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
158.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
158.6
GTEX-R53T-0326-SM-48FEC
50-59 years, female
157.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
157.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
156.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
155.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
154.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
153.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
153.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
152.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
152.3
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
151.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
150.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
149.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
147.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
147.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
145.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
145.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
145.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
145.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
144.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
143.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
143.4
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
142.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
142.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
141.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
139.3
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
138.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
138.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
138.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
137.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
136.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
134.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
133.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
133.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
132.0
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
130.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
130.4
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
129.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
129.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
128.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
127.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
127.2
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
126.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
126.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
124.9
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
122.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
119.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
118.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
118.1
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
116.2
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
115.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
111.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
111.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
109.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
105.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
105.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
105.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
105.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
89.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
85.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
54.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.