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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 14261.5
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 2967.1
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 4313.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 7537
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 7257.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 12095.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 4681.4
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 7879.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 14060.9
Min RPKM: 433.6
Std RPKM: 1972.7
Median RPKM: 2945.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
14060.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
8612.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
8525.7
GTEX-11GSP-0626-SM-5986T
60-69 years, female
7981.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
7945.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
7004.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
6946.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
6833.1
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
6606.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
6598.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
6040.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
5822.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
5637.9
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
5577.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
5537.9
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
5278.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
5148.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
5069.9
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
5041.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
4968.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
4902.8
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
4849.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
4774.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
4650.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
4568.2
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
4550.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
4475.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
4431.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
4380.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
4339.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
4311.6
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
4204.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
4203.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
3987.1
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
3984.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
3973.9
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
3922.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
3905.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
3854.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
3837.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
3817.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
3791.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
3764.9
GTEX-YECK-1926-SM-4W21H
60-69 years, male
3720.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
3684.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
3626.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
3615.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
3520.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
3511.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
3397.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
3304.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
3291.5
GTEX-REY6-1226-SM-48FDR
60-69 years, male
3279.5
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
3257.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
3143.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
3140.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
3119.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
3019.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
2956.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
2945.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
2892.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
2877.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
2871.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
2853.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
2850.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
2838.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
2834.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
2789.6
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
2768.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
2719.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
2626.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
2587.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
2534.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
2524.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
2521.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
2506.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
2501.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
2499.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
2491.4
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
2449.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
2432.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
2401.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
2327.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
2280.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
2232.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
2224.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
2197.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
2127.8
GTEX-X261-1726-SM-4PQYT
50-59 years, male
2117.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
2084.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
2068.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
2035.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
2029.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
2027.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
2001.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
1994.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
1961.6
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
1959.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
1931.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
1908.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
1884.1
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1834.4
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
1826.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
1688.4
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
1603.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
1598.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
1470.3
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
1396.7
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1323.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
1251.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
1194.9
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
1190.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
1117.5
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
1101.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
1009.9
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
779.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
667.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
557.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
433.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.