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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 807.8
Min RPKM: 105.4
Std RPKM: 165.7
Median RPKM: 342.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
807.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
737.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
710.9
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
691.4
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
669.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
642.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
632.9
GTEX-1122O-1326-SM-5H11F
60-69 years, female
619.8
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
592.9
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
573.7
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
571.4
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
566.9
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
566.8
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
565.8
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
556.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
547.0
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
524.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
509.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
507.0
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
502.3
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
500.1
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
498.5
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
497.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
492.6
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
487.3
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
483.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
461.8
GTEX-13113-1226-SM-5EGHT
60-69 years, female
459.0
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
425.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
421.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
394.8
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
392.8
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
388.7
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
375.9
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
365.8
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
360.8
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
360.2
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
356.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
354.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
352.3
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
352.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
347.0
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
346.7
GTEX-13O61-1326-SM-5KM31
60-69 years, male
345.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
340.0
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
334.3
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
333.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
330.6
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
328.6
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
327.1
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
321.8
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
321.1
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
320.9
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
320.7
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
315.1
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
314.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
313.3
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
311.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
303.8
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
300.4
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
296.1
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
280.1
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
275.7
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
270.1
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
269.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
243.3
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
235.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
230.7
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
217.1
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
215.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
209.0
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
202.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
200.4
GTEX-1192X-2526-SM-59868
50-59 years, male
188.4
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
182.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
167.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
160.4
GTEX-13111-1426-SM-5DUW3
50-59 years, male
158.8
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
153.4
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
142.0
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
135.2
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
133.9
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
130.2
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
118.7
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
114.9
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
110.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
108.4
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
105.4
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.