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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 3131.7
Min RPKM: 0.6
Std RPKM: 699.5
Median RPKM: 291.3
GTEX-Y111-2626-SM-4TT24
50-59 years, male
3131.7
GTEX-111FC-2926-SM-5GZY7
60-69 years, male
2992.8
GTEX-X3Y1-1926-SM-4PQZO
40-49 years, male
2345.3
GTEX-WYVS-2026-SM-4RGNS
40-49 years, female
1557.0
GTEX-13G51-2426-SM-5LZY8
60-69 years, male
1536.0
GTEX-11TUW-2426-SM-5EQKB
60-69 years, male
1530.7
GTEX-X261-2426-SM-4PQZU
50-59 years, male
1414.4
GTEX-13NYB-2426-SM-5IFF4
40-49 years, male
1369.9
GTEX-11NV4-1926-SM-5N9D4
60-69 years, male
1238.8
GTEX-13OVL-2926-SM-5IFG3
50-59 years, male
1077.8
GTEX-ZE7O-2926-SM-51MSG
50-59 years, female
948.1
GTEX-12WSM-1826-SM-5BC64
60-69 years, male
889.6
GTEX-13JVG-2926-SM-5J2N9
60-69 years, male
853.2
GTEX-1445S-2926-SM-5O993
60-69 years, male
830.8
GTEX-13QJC-2326-SM-5Q5CD
60-69 years, female
757.9
GTEX-XGQ4-2626-SM-4AT6B
50-59 years, male
688.1
GTEX-146FR-1226-SM-5SIA7
60-69 years, female
676.6
GTEX-YB5K-1726-SM-5IFIZ
40-49 years, female
597.7
GTEX-11WQK-2926-SM-5EQKT
50-59 years, male
586.2
GTEX-11ZTT-2226-SM-5CVLP
60-69 years, female
496.9
GTEX-14B4R-1426-SM-5Q5CG
30-39 years, male
490.2
GTEX-X5EB-1726-SM-4E3J7
40-49 years, male
386.0
GTEX-13111-2326-SM-5LZUQ
50-59 years, male
385.7
GTEX-1117F-3026-SM-5GZYU
60-69 years, female
355.1
GTEX-ZC5H-2726-SM-5KLZW
40-49 years, female
344.4
GTEX-11EQ9-2026-SM-5P9JI
30-39 years, male
343.3
GTEX-13VXT-1726-SM-5IFF5
20-29 years, female
333.3
GTEX-13O21-1926-SM-5MR39
50-59 years, male
291.3
GTEX-145ME-1626-SM-5RQI3
40-49 years, female
291.3
GTEX-ZXG5-2826-SM-5NQ8T
60-69 years, male
265.8
GTEX-X15G-2126-SM-4PQZR
50-59 years, female
253.3
GTEX-11P82-0926-SM-5986X
20-29 years, male
233.9
GTEX-13CF2-2426-SM-5LZYL
60-69 years, male
232.9
GTEX-11P81-2026-SM-5P9GT
30-39 years, female
232.8
GTEX-ZQUD-2126-SM-51MSY
30-39 years, male
182.8
GTEX-WOFM-2126-SM-4OOSR
20-29 years, male
157.9
GTEX-YF7O-2226-SM-5CVN8
50-59 years, male
116.0
GTEX-12WSN-2226-SM-5DUXT
40-49 years, male
112.1
GTEX-13OVI-2326-SM-5KM47
60-69 years, female
106.0
GTEX-Y5V6-2226-SM-4VDTC
60-69 years, male
102.1
GTEX-1339X-2326-SM-5HL5B
40-49 years, male
95.3
GTEX-13113-1526-SM-5EGHV
60-69 years, female
91.1
GTEX-12WSL-2126-SM-5GCNG
50-59 years, male
79.9
GTEX-1314G-2026-SM-5LZUM
30-39 years, male
77.0
GTEX-XMK1-2626-SM-4B65R
40-49 years, male
76.9
GTEX-Y3I4-1926-SM-4TT8L
50-59 years, male
42.7
GTEX-ZT9W-2126-SM-51MSF
50-59 years, male
37.7
GTEX-WFJO-2026-SM-4LVM3
30-39 years, male
31.3
GTEX-ZA64-1726-SM-5CVMF
20-29 years, male
24.0
GTEX-131XF-2826-SM-5EGKH
60-69 years, male
18.2
GTEX-ZP4G-1926-SM-57WDZ
20-29 years, female
17.1
GTEX-11ZTS-3026-SM-5EQM7
60-69 years, female
10.5
GTEX-Y5LM-1826-SM-4VDT9
40-49 years, female
9.7
GTEX-ZPU1-2326-SM-57WEP
40-49 years, male
9.5
GTEX-XV7Q-2426-SM-4BRV8
40-49 years, female
4.5
GTEX-ZQG8-2126-SM-4YCF1
60-69 years, female
1.9
GTEX-13NYC-2626-SM-5K7VN
60-69 years, male
0.6
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.