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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 1831.8
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 2898
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 2011.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 3057.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 3049.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 2158.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 2625.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 3483.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1700.7
Min RPKM: 95.8
Std RPKM: 326.7
Median RPKM: 577.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1700.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
1642.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
1434.1
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
1390.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
1239.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
1204.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
1202.9
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
1185.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
1174.9
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
1150.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
1125.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
1124.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
1118.6
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
1115.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
1102.9
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
1094.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
1094.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
1067.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
1066.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
1065.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
1028.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
1017.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
1007.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
1001.9
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
982.7
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
981.0
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
961.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
960.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
955.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
955.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
951.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
894.4
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
884.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
849.6
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
830.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
821.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
812.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
801.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
786.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
783.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
761.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
761.3
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
742.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
729.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
711.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
698.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
695.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
694.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
686.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
663.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
649.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
646.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
639.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
639.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
634.4
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
601.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
587.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
586.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
583.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
577.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
569.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
552.4
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
548.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
544.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
525.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
525.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
523.4
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
518.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
516.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
504.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
498.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
495.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
489.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
488.2
GTEX-13112-1426-SM-5EGH8
50-59 years, male
487.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
483.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
476.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
473.3
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
470.7
GTEX-11GSP-0626-SM-5986T
60-69 years, female
470.2
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
467.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
456.6
GTEX-S32W-1926-SM-4AD63
50-59 years, female
456.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
455.8
GTEX-12696-0826-SM-5EGGE
60-69 years, male
454.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
450.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
440.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
433.7
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
432.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
427.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
417.4
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
390.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
389.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
389.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
386.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
380.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
379.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
371.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
370.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
368.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
365.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
358.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
349.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
336.9
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
333.3
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
325.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
320.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
313.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
298.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
291.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
283.6
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
278.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
269.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
268.5
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
258.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
248.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
234.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
204.9
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
95.8
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.