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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 217.6
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 309
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 195.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 193.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 225.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 276.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 237.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 300.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 227.5
Min RPKM: 31.7
Std RPKM: 38.5
Median RPKM: 107.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
227.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
219.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
216.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
201.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
201.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
197.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
192.3
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
187.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
185.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
177.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
176.1
GTEX-P78B-1326-SM-3P611
40-49 years, female
171.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
169.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
168.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
166.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
163.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
161.0
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
156.5
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
153.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
153.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
152.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
149.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
148.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
143.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
142.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
139.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
139.8
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
139.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
138.6
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
138.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
137.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
136.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
135.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
134.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
132.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
132.2
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
131.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
131.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
131.4
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
128.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
125.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
124.9
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
123.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
121.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
121.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
120.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
120.3
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
119.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
117.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
116.9
GTEX-Q734-0326-SM-48U15
40-49 years, female
115.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
113.8
GTEX-RU72-1426-SM-46MUF
50-59 years, female
113.0
GTEX-REY6-1226-SM-48FDR
60-69 years, male
112.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
111.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
109.3
GTEX-RN64-1826-SM-48FDV
50-59 years, male
109.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
108.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
108.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
107.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
106.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
106.5
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
105.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
105.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
102.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
102.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
102.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
101.4
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
101.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
101.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
100.9
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
100.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
100.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
99.8
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
99.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
99.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
98.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
97.9
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
97.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
96.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
96.5
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
93.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
93.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
93.4
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
93.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
92.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
91.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
91.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
91.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
91.0
GTEX-X261-1726-SM-4PQYT
50-59 years, male
88.9
GTEX-QEL4-1226-SM-447A4
50-59 years, male
88.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
88.5
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
88.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
87.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
86.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
84.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
84.1
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
82.5
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
81.2
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
80.1
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
79.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
78.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
78.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
78.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
78.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
74.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
74.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
73.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
71.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
71.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
71.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
62.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
58.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
55.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
55.0
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
52.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
46.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
31.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.