Fields »
ABOUTMENU
HELP
NEWS
PTCH2
COLON - Expression summary
RNA expressioni
HPA:0.8TPM
GTEx:1.8RPKM
FANTOM5:1.9Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 0.8
overview Male, age 54 Sample 1
TPM: 1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 0.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 0.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 0.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 1.8
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 2.6
Samples: 149

Max RPKM: 5.0
Min RPKM: 0.7
Std RPKM: 1.0
Median RPKM: 2.3
GTEX-117XS-2226-SM-5GIE1 60-69 years, male 5.0
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 5.0
GTEX-YECK-2826-SM-5IFHF 60-69 years, male 5.0
GTEX-14A5I-2426-SM-5Q5CP 50-59 years, female 4.8
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 4.8
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 4.7
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 4.6
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 4.5
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 4.5
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 4.5
Show all
Colon - Transverse
RPKM: 1.3
Samples: 196

Max RPKM: 6.0
Min RPKM: 0.2
Std RPKM: 0.9
Median RPKM: 0.9
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 6.0
GTEX-11GSP-1626-SM-5986N 60-69 years, female 4.5
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 4.3
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 3.8
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 3.4
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 3.4
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 3.3
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 3.3
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 3.3
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 3.2
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 1.9
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 4.0
FF:10014-101C5 62,83,84 years, mixed 1.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.