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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 511.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 303
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 178.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 314.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 420.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 272.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 226.6
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 498.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 564.5
Min RPKM: 63.3
Std RPKM: 69.7
Median RPKM: 216.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
564.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
431.5
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
363.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
339.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
333.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
330.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
325.2
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
322.2
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
320.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
314.5
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
305.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
303.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
297.7
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
297.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
294.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
286.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
281.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
277.0
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
271.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
271.2
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
270.8
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
266.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
265.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
264.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
263.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
263.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
257.2
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
253.5
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
253.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
252.2
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
252.1
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
249.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
248.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
245.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
242.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
241.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
238.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
237.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
237.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
236.3
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
235.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
233.9
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
233.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
231.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
230.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
230.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
228.2
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
227.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
226.9
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
226.6
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
225.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
224.4
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
223.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
222.7
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
221.6
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
220.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
220.0
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
219.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
219.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
216.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
211.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
210.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
209.6
GTEX-S33H-1626-SM-4AD68
30-39 years, male
208.1
GTEX-QEL4-1226-SM-447A4
50-59 years, male
207.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
204.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
202.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
199.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
197.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
195.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
195.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
194.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
194.5
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
194.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
194.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
193.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
193.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
193.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
193.0
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
192.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
192.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
187.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
185.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
184.0
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
183.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
183.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
182.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
179.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
178.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
177.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
176.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
173.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
172.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
171.4
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
169.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
168.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
166.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
164.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
161.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
159.4
GTEX-YECK-1926-SM-4W21H
60-69 years, male
158.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
156.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
152.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
151.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
149.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
137.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
129.9
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
129.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
125.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
122.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
121.8
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
121.4
GTEX-13112-1426-SM-5EGH8
50-59 years, male
118.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
111.8
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
108.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
104.4
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
88.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
76.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
63.3
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.