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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 166.5
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 41
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 47
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 113.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 106
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 230.6
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 121
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 201.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 257.1
Min RPKM: 47.8
Std RPKM: 44.2
Median RPKM: 128.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
257.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
229.4
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
220.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
215.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
208.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
208.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
205.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
203.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
200.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
198.9
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
196.3
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
193.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
192.6
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
191.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
182.1
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
179.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
175.8
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
175.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
172.4
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
172.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
171.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
171.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
168.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
168.5
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
167.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
166.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
158.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
158.7
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
157.9
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
156.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
156.7
GTEX-1399T-0826-SM-5IFES
60-69 years, male
156.3
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
153.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
153.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
153.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
152.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
149.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
148.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
147.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
146.3
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
145.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
143.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
143.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
142.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
140.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
139.6
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
139.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
137.3
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
137.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
136.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
135.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
135.2
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
132.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
132.1
GTEX-12696-0826-SM-5EGGE
60-69 years, male
130.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
130.6
GTEX-R53T-0326-SM-48FEC
50-59 years, female
130.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
130.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
129.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
128.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
125.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
123.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
122.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
120.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
120.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
119.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
118.3
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
117.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
117.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
117.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
116.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
114.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
114.4
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
112.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
110.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
110.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
110.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
109.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
107.0
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
104.0
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
103.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
103.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
102.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
102.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
101.7
GTEX-S33H-1626-SM-4AD68
30-39 years, male
100.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
99.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
97.1
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
95.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
95.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
95.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
94.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
93.2
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
90.9
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
88.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
88.4
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
87.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
87.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
80.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
78.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
77.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
75.6
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
73.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
71.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
71.2
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
70.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
70.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
69.4
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
69.2
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
67.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
66.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
64.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
64.5
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
61.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
60.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
58.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
53.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
53.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
47.8
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.