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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 317.5
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 167.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 170.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 170.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 181.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 191.1
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 150
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 190.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 591.1
Min RPKM: 15.5
Std RPKM: 73.1
Median RPKM: 108.8
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
591.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
371.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
297.8
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
264.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
259.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
249.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
246.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
237.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
226.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
225.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
224.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
222.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
222.7
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
221.3
GTEX-S32W-1926-SM-4AD63
50-59 years, female
219.6
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
198.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
196.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
190.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
187.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
180.5
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
173.1
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
172.1
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
171.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
164.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
164.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
162.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
162.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
159.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
159.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
159.7
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
158.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
157.7
GTEX-11GSP-0626-SM-5986T
60-69 years, female
156.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
155.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
154.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
144.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
144.3
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
143.5
GTEX-13113-1326-SM-5GCOI
60-69 years, female
137.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
135.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
131.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
129.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
129.5
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
128.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
127.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
127.1
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
125.0
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
120.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
118.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
118.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
116.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
114.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
113.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
111.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
110.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
110.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
109.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
109.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
108.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
108.8
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
108.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
106.2
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
105.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
105.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
105.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
104.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
104.2
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
104.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
104.0
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
103.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
101.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
100.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
100.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
99.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
97.6
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
96.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
95.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
93.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
92.9
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
92.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
92.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
90.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
85.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
84.6
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
84.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
84.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
84.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
83.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
83.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
82.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
82.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
82.3
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
82.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
81.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
81.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
77.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
76.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
75.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
74.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
74.8
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
70.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
69.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
69.1
GTEX-RN64-1826-SM-48FDV
50-59 years, male
67.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
66.8
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
66.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
65.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
64.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
64.4
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
62.1
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
61.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
59.4
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
57.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
55.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
54.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
54.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
46.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
42.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
15.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.