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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 1040.6
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 689.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 680.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1050.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 950
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 625.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 829.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1095.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 350.4
Min RPKM: 31.9
Std RPKM: 60.3
Median RPKM: 126.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
350.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
308.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
304.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
289.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
283.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
269.0
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
267.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
251.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
248.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
228.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
225.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
222.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
213.7
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
213.1
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
209.9
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
198.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
197.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
195.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
192.1
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
188.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
187.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
183.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
182.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
180.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
179.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
178.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
178.0
GTEX-P78B-1326-SM-3P611
40-49 years, female
176.1
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
171.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
170.5
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
168.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
166.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
166.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
166.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
165.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
165.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
162.1
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
161.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
161.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
160.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
159.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
158.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
158.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
157.5
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
150.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
147.2
GTEX-13112-1426-SM-5EGH8
50-59 years, male
146.7
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
145.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
145.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
143.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
140.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
134.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
134.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
132.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
131.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
131.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
131.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
130.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
128.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
126.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
126.1
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
125.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
124.6
GTEX-REY6-1226-SM-48FDR
60-69 years, male
124.4
GTEX-RN64-1826-SM-48FDV
50-59 years, male
122.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
121.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
121.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
119.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
119.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
118.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
118.5
GTEX-13113-1326-SM-5GCOI
60-69 years, female
117.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
117.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
115.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
115.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
114.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
111.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
110.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
108.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
107.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
106.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
106.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
106.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
105.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
105.3
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
105.3
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
105.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
104.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
100.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
93.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
92.7
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
90.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
89.0
GTEX-11GSP-0626-SM-5986T
60-69 years, female
88.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
87.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
87.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
85.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
81.2
GTEX-RU72-1426-SM-46MUF
50-59 years, female
81.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
81.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
80.2
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
80.2
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
78.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
74.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
73.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
72.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
71.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
71.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
70.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
70.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
69.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
68.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
68.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
67.5
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
66.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
59.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
48.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
44.4
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
31.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.