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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 405.4
Min RPKM: 101.2
Std RPKM: 65.2
Median RPKM: 187.6
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
405.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
367.8
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
352.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
338.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
329.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
323.4
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
319.8
GTEX-1192X-2526-SM-59868
50-59 years, male
301.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
301.7
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
299.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
285.0
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
281.9
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
277.5
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
277.0
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
272.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
263.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
257.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
256.9
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
248.1
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
244.3
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
237.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
236.9
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
236.3
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
233.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
232.4
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
231.3
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
228.3
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
222.8
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
221.6
GTEX-13111-1426-SM-5DUW3
50-59 years, male
220.8
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
217.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
214.2
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
212.7
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
211.4
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
203.8
GTEX-13113-1226-SM-5EGHT
60-69 years, female
203.7
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
200.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
198.6
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
194.8
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
192.2
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
192.0
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
190.5
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
189.2
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
187.8
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
187.3
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
181.8
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
181.4
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
177.4
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
177.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
176.7
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
176.4
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
174.3
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
174.3
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
172.4
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
171.4
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
171.1
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
171.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
170.7
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
168.6
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
166.1
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
165.4
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
165.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
162.9
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
162.8
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
158.3
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
157.8
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
157.6
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
155.9
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
154.2
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
151.5
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
151.0
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
150.7
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
150.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
149.2
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
139.8
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
137.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
136.7
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
136.0
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
128.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
122.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
121.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
119.0
GTEX-ZTSS-0926-SM-59865
40-49 years, male
113.8
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
110.6
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
108.4
GTEX-1122O-1326-SM-5H11F
60-69 years, female
107.4
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
101.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
101.2
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.