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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 156
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 18.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 14.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 33.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 35.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 93.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 34
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 100.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 357.6
Min RPKM: 34.8
Std RPKM: 56.1
Median RPKM: 175.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
357.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
315.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
312.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
288.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
281.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
274.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
263.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
257.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
252.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
252.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
250.2
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
247.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
245.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
243.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
241.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
241.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
240.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
235.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
234.5
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
233.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
233.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
233.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
231.9
GTEX-R53T-0326-SM-48FEC
50-59 years, female
226.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
224.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
222.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
222.4
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
219.8
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
217.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
216.9
GTEX-S33H-1626-SM-4AD68
30-39 years, male
215.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
214.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
213.5
GTEX-RN64-1826-SM-48FDV
50-59 years, male
211.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
209.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
206.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
206.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
204.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
200.7
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
198.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
198.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
197.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
196.5
GTEX-REY6-1226-SM-48FDR
60-69 years, male
194.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
192.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
191.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
188.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
186.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
186.0
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
183.9
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
183.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
181.3
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
181.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
180.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
180.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
179.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
177.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
176.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
176.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
175.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
174.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
174.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
173.1
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
172.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
171.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
171.7
GTEX-Q734-0326-SM-48U15
40-49 years, female
167.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
165.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
163.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
162.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
161.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
161.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
158.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
156.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
156.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
155.5
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
155.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
154.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
153.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
152.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
150.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
147.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
147.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
146.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
146.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
143.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
142.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
139.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
137.7
GTEX-11GSP-0626-SM-5986T
60-69 years, female
137.4
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
133.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
133.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
132.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
131.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
131.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
124.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
124.4
GTEX-13112-1426-SM-5EGH8
50-59 years, male
124.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
124.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
123.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
121.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
120.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
119.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
112.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
112.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
112.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
107.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
104.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
103.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
103.5
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
99.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
93.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
86.5
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
86.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
85.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
83.3
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
80.5
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
78.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
34.8
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.