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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 389.2
Min RPKM: 118.8
Std RPKM: 44.7
Median RPKM: 198.9
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
389.2
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
333.5
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
326.8
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
288.6
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
286.7
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
281.3
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
276.2
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
273.0
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
269.7
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
263.3
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
263.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
263.0
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
251.3
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
246.3
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
242.3
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
239.9
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
239.8
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
236.6
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
235.1
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
234.7
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
234.7
GTEX-QCQG-1226-SM-48U23
50-59 years, female
234.5
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
233.6
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
233.3
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
230.4
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
229.6
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
228.4
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
226.8
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
222.9
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
222.4
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
221.7
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
220.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
217.8
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
217.5
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
215.8
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
215.6
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
211.2
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
210.1
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
208.2
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
205.4
GTEX-S341-1226-SM-4AD5S
40-49 years, female
205.3
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
204.4
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
203.4
GTEX-11I78-2026-SM-5987C
50-59 years, female
203.3
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
202.5
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
202.0
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
199.7
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
199.4
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
198.4
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
198.4
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
198.2
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
197.5
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
197.5
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
197.0
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
196.6
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
195.4
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
195.3
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
194.4
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
193.8
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
192.9
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
192.7
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
187.0
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
186.9
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
183.0
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
182.1
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
180.6
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
180.5
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
180.2
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
180.0
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
178.7
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
176.8
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
176.7
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
176.4
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
176.1
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
175.4
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
174.6
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
174.1
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
174.0
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
173.6
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
172.7
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
172.4
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
169.9
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
169.8
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
168.5
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
163.7
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
162.9
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
155.3
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
155.2
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
152.0
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
145.9
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
143.3
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
142.0
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
139.8
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
128.2
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
125.6
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
118.8
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.