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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 53.8
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 51
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 35.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 50.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 52.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 31.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 39.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 42.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 49.3
Min RPKM: 8.7
Std RPKM: 6.4
Median RPKM: 21.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
49.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
44.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
41.9
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
37.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
35.8
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
35.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
34.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
34.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
33.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
33.3
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
33.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
32.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
31.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
31.3
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
31.2
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
31.0
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
30.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
29.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
28.6
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
28.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
28.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
27.6
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
27.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
27.2
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
26.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
26.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
26.2
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
25.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
25.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
25.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
25.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
24.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
24.7
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
24.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
24.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
24.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
24.6
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
24.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
24.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
24.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
24.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
23.9
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
23.6
GTEX-R53T-0326-SM-48FEC
50-59 years, female
23.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
23.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
23.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
22.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
22.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
22.6
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
22.6
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
22.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
22.3
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
22.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
22.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
21.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
21.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
21.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
21.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
21.4
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
21.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
21.2
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
21.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
21.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
21.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
21.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
21.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
20.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
20.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
20.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
20.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
20.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
20.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
20.3
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
20.3
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
20.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
20.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
19.3
GTEX-RN64-1826-SM-48FDV
50-59 years, male
19.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
19.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
19.2
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
19.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
19.1
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
18.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
18.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
18.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
18.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
18.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
18.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
18.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
18.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
18.2
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
18.2
GTEX-13112-1426-SM-5EGH8
50-59 years, male
17.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
17.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
17.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
17.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
17.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
17.3
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
17.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
17.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
17.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
17.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
17.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
16.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
16.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
16.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
16.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
16.6
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
16.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
16.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
16.6
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
16.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
16.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
16.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
15.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
13.8
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
13.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
12.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
8.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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Female, age 60
