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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 580.0
Min RPKM: 122.1
Std RPKM: 78.9
Median RPKM: 259.8
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
580.0
GTEX-1192X-2526-SM-59868
50-59 years, male
489.0
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
444.2
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
414.2
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
402.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
390.3
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
382.6
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
378.3
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
372.0
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
363.6
GTEX-117YX-0326-SM-5GICL
50-59 years, male
356.5
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
346.8
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
338.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
336.2
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
334.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
328.7
GTEX-13111-1426-SM-5DUW3
50-59 years, male
328.4
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
326.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
325.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
322.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
311.6
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
308.2
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
307.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
306.2
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
305.9
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
305.3
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
300.1
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
299.7
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
297.8
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
294.2
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
291.4
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
289.7
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
287.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
285.5
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
281.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
281.0
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
275.4
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
275.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
272.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
270.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
269.5
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
267.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
265.2
GTEX-13113-1226-SM-5EGHT
60-69 years, female
261.8
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
257.8
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
256.2
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
253.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
252.2
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
249.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
248.5
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
247.4
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
246.8
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
246.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
241.3
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
241.2
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
239.8
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
237.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
236.5
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
236.3
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
227.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
224.8
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
224.0
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
223.3
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
220.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
217.8
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
217.1
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
216.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
212.6
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
208.3
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
205.4
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
203.1
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
198.7
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
195.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
195.2
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
193.3
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
191.6
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
189.9
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
185.5
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
178.1
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
171.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
165.6
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
157.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
155.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
152.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
150.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
149.4
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
141.2
GTEX-111YS-1426-SM-5GID8
60-69 years, male
122.1
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.