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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 599.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 428.1
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 462.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 490.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 462.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 602.6
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 501.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 539.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 338.9
Min RPKM: 47.3
Std RPKM: 47.7
Median RPKM: 153.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
338.9
GTEX-S32W-1926-SM-4AD63
50-59 years, female
333.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
300.8
GTEX-12696-0826-SM-5EGGE
60-69 years, male
300.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
261.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
245.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
244.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
237.0
GTEX-QESD-2026-SM-447BI
20-29 years, male
228.8
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
228.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
225.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
221.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
220.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
215.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
213.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
206.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
205.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
204.1
GTEX-QEL4-1226-SM-447A4
50-59 years, male
203.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
202.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
202.2
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
197.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
195.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
193.7
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
193.6
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
192.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
187.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
186.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
184.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
182.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
182.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
180.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
180.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
177.8
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
173.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
172.5
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
170.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
170.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
168.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
168.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
167.8
GTEX-X261-1726-SM-4PQYT
50-59 years, male
166.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
166.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
166.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
165.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
164.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
163.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
163.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
162.4
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
161.9
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
161.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
161.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
160.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
160.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
159.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
158.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
157.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
155.0
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
153.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
153.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
150.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
149.2
GTEX-S33H-1626-SM-4AD68
30-39 years, male
147.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
146.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
146.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
146.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
144.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
144.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
143.9
GTEX-Q734-0326-SM-48U15
40-49 years, female
143.4
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
143.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
142.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
142.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
141.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
141.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
141.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
140.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
140.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
140.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
138.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
138.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
138.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
138.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
136.9
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
136.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
133.9
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
133.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
129.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
129.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
128.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
128.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
127.4
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
126.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
125.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
124.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
123.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
122.8
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
121.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
120.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
118.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
118.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
117.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
116.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
115.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
113.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
112.2
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
110.7
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
109.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
108.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
106.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
104.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
104.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
103.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
102.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
99.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
98.9
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
94.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
92.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
47.3
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.