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COLON - Expression summary
RNA expressioni
HPA:33.8TPM
GTEx:26.4RPKM
FANTOM5:75.6Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 33.8
overview Male, age 54 Sample 1
TPM: 42.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 28.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 35.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 46.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 14.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 35
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 34.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 30.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 28.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 48.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 30.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 42.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 22.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 26.4
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 17.9
Samples: 149

Max RPKM: 112.4
Min RPKM: 4.0
Std RPKM: 13.2
Median RPKM: 14.1
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 112.4
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 73.4
GTEX-ZVZQ-2626-SM-59HLB 60-69 years, female 65.6
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 51.9
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 50.0
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 49.0
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 41.5
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 40.8
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 37.3
GTEX-145LS-2926-SM-5O99G 60-69 years, female 36.3
Show all
Colon - Transverse
RPKM: 32.8
Samples: 196

Max RPKM: 73.6
Min RPKM: 6.4
Std RPKM: 14.7
Median RPKM: 32.4
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 73.6
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 73.0
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 67.9
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 67.6
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 64.9
GTEX-XUZC-1326-SM-4BRV2 30-39 years, female 64.6
GTEX-PWN1-1426-SM-48TDF 40-49 years, female 63.6
GTEX-145LT-0926-SM-5LU9C 40-49 years, male 63.4
GTEX-1128S-1626-SM-5H12O 60-69 years, female 63.3
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 63.1
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 75.6
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 120.3
FF:10014-101C5 62,83,84 years, mixed 75.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.