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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 591.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1032.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 557.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 835.4
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 950
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 466.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 955.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 569
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 734.0
Min RPKM: 23.6
Std RPKM: 170.6
Median RPKM: 234.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
734.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
706.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
683.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
651.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
650.3
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
644.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
629.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
586.7
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
572.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
560.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
548.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
538.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
523.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
518.1
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
517.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
503.4
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
494.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
487.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
475.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
474.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
446.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
433.0
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
431.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
407.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
401.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
396.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
384.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
383.0
GTEX-P78B-1326-SM-3P611
40-49 years, female
376.6
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
372.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
360.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
354.6
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
347.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
343.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
342.9
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
330.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
325.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
325.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
324.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
318.9
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
304.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
301.1
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
286.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
283.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
282.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
275.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
272.3
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
269.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
261.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
253.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
252.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
250.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
248.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
247.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
246.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
241.4
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
240.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
235.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
235.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
234.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
232.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
227.8
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
226.9
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
221.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
218.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
213.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
208.3
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
201.6
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
201.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
200.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
195.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
193.0
GTEX-13113-1326-SM-5GCOI
60-69 years, female
192.1
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
187.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
187.1
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
187.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
179.9
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
175.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
173.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
170.2
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
158.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
156.3
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
156.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
153.5
GTEX-REY6-1226-SM-48FDR
60-69 years, male
150.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
146.3
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
145.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
139.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
137.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
130.2
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
128.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
125.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
121.0
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
119.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
115.5
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
109.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
108.3
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
106.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
105.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
99.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
97.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
96.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
94.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
93.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
93.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
85.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
82.7
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
78.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
78.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
72.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
71.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
71.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
70.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
66.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
63.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
62.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
53.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
51.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
23.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.