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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 337.8
Min RPKM: 6.2
Std RPKM: 67.8
Median RPKM: 57.9
GTEX-1192X-2526-SM-59868
50-59 years, male
337.8
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
332.9
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
282.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
223.3
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
217.7
GTEX-117YX-0326-SM-5GICL
50-59 years, male
212.5
GTEX-13111-1426-SM-5DUW3
50-59 years, male
195.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
189.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
179.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
171.2
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
157.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
137.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
128.6
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
126.3
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
126.1
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
125.4
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
119.8
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
119.3
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
113.3
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
112.5
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
109.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
99.5
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
97.9
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
93.3
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
90.4
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
85.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
84.6
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
78.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
77.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
74.1
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
70.0
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
69.5
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
68.7
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
66.9
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
66.3
GTEX-13113-1226-SM-5EGHT
60-69 years, female
65.9
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
65.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
64.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
61.5
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
60.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
59.0
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
58.3
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
58.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
57.9
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
57.9
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
56.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
56.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
52.4
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
52.4
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
51.2
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
48.9
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
48.0
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
47.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
47.1
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
41.8
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
41.8
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
41.6
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
40.8
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
38.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
38.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
37.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
36.6
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
36.0
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
35.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
35.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
34.1
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
32.2
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
30.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
28.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
27.7
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
26.8
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
26.3
GTEX-1122O-1326-SM-5H11F
60-69 years, female
26.1
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
25.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
24.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
24.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
23.9
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
21.3
GTEX-ZTSS-0926-SM-59865
40-49 years, male
20.3
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
18.2
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
17.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
16.6
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
16.5
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
16.4
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
15.9
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
15.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
14.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
6.2
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.