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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 353.3
Min RPKM: 81.0
Std RPKM: 56.0
Median RPKM: 170.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
353.3
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
312.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
309.8
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
301.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
281.1
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
254.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
253.1
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
252.1
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
250.8
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
247.4
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
246.3
GTEX-111YS-1426-SM-5GID8
60-69 years, male
242.4
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
242.1
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
235.1
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
233.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
232.5
GTEX-1122O-1326-SM-5H11F
60-69 years, female
230.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
221.7
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
218.5
GTEX-13113-1226-SM-5EGHT
60-69 years, female
216.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
212.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
207.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
205.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
203.3
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
202.1
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
201.6
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
196.8
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
196.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
189.9
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
187.1
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
183.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
183.8
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
183.6
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
183.3
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
181.7
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
178.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
177.7
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
175.5
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
174.0
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
172.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
171.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
171.2
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
171.1
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
170.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
170.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
167.9
GTEX-1192X-2526-SM-59868
50-59 years, male
162.4
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
162.3
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
162.0
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
161.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
161.3
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
160.0
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
159.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
158.7
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
157.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
155.4
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
154.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
148.3
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
145.9
GTEX-13O61-1326-SM-5KM31
60-69 years, male
143.8
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
142.7
GTEX-117YX-0326-SM-5GICL
50-59 years, male
141.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
140.3
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
140.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
133.0
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
129.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
129.2
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
129.0
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
128.4
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
125.5
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
125.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
121.7
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
121.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
118.8
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
117.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
116.1
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
115.5
GTEX-13111-1426-SM-5DUW3
50-59 years, male
109.8
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
109.3
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
105.5
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
104.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
104.1
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
103.1
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
98.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
95.5
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
87.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
83.0
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
81.0
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.