Fields »
ABOUTMENU
HELP
NEWS
LPCAT3
COLON - Expression summary
RNA expressioni
HPA:50.5TPM
GTEx:15.0RPKM
FANTOM5:114.4Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 50.5
overview Male, age 54 Sample 1
TPM: 27.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 36
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 29.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 73.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 27.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 64.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 81
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 53.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 32
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 79.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 55.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 50.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 45.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 15.0
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 10.7
Samples: 149

Max RPKM: 27.3
Min RPKM: 3.9
Std RPKM: 4.4
Median RPKM: 9.9
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 27.3
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 24.3
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 23.8
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 21.8
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 21.6
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 19.8
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 19.6
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 19.4
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 19.4
GTEX-1211K-1826-SM-5EGJ2 60-69 years, female 19.2
Show all
Colon - Transverse
RPKM: 18.3
Samples: 196

Max RPKM: 42.8
Min RPKM: 5.5
Std RPKM: 6.6
Median RPKM: 18.5
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 42.8
GTEX-R55D-1826-SM-48FEF 50-59 years, male 38.7
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 33.3
GTEX-11P7K-1526-SM-5EGI7 30-39 years, male 32.5
GTEX-QLQW-0426-SM-447A7 30-39 years, male 32.2
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 32.0
GTEX-W5WG-2426-SM-4LMI6 50-59 years, female 31.9
GTEX-13111-0726-SM-5DUVE 50-59 years, male 31.1
GTEX-ZLV1-1226-SM-4WWBX 60-69 years, female 30.9
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 29.9
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 114.4
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 72.9
FF:10014-101C5 62,83,84 years, mixed 114.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.