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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 55.6
Min RPKM: 13.2
Std RPKM: 9.2
Median RPKM: 25.6
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
55.6
GTEX-1192X-2526-SM-59868
50-59 years, male
53.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
49.2
GTEX-13111-1426-SM-5DUW3
50-59 years, male
46.8
GTEX-117YX-0326-SM-5GICL
50-59 years, male
44.8
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
44.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
43.5
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
43.4
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
43.0
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
42.9
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
40.6
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
39.7
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
38.4
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
37.7
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
37.0
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
35.6
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
35.3
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
35.2
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
34.0
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
33.6
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
33.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
32.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
32.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
31.3
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
30.6
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
30.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
29.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
29.9
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
29.9
GTEX-13113-1226-SM-5EGHT
60-69 years, female
28.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
28.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
28.2
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
27.8
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
27.6
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
27.3
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
27.2
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
27.1
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
27.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
26.8
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
26.4
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
26.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
25.8
GTEX-13O61-1326-SM-5KM31
60-69 years, male
25.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
25.6
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
25.5
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
25.3
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
25.1
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
25.1
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
24.8
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
24.4
GTEX-ZTSS-0926-SM-59865
40-49 years, male
24.3
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
23.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
23.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
23.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
23.1
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
23.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
22.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
22.9
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
22.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
22.6
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
22.5
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
22.3
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
22.2
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
21.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
21.8
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
21.7
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
21.5
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
21.0
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
20.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
20.4
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
20.4
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
20.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
19.9
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
19.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
19.5
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
19.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
18.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
18.0
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
18.0
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
17.9
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
17.7
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
17.0
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
16.9
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
15.8
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
14.8
GTEX-111YS-1426-SM-5GID8
60-69 years, male
13.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
13.5
GTEX-1122O-1326-SM-5H11F
60-69 years, female
13.2
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.