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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 879.1
Min RPKM: 254.0
Std RPKM: 108.3
Median RPKM: 397.8
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
879.1
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
708.0
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
675.3
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
654.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
645.1
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
561.5
GTEX-1192X-2526-SM-59868
50-59 years, male
534.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
531.5
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
523.3
GTEX-111YS-1426-SM-5GID8
60-69 years, male
506.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
506.2
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
505.8
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
504.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
499.6
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
492.5
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
487.1
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
482.2
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
480.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
474.5
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
474.0
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
472.1
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
468.4
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
464.7
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
454.5
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
454.1
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
453.1
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
452.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
451.1
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
445.3
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
435.8
GTEX-13113-1226-SM-5EGHT
60-69 years, female
435.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
427.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
425.5
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
424.9
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
422.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
421.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
418.4
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
416.3
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
414.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
407.1
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
406.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
403.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
401.5
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
398.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
396.7
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
393.9
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
389.4
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
388.4
GTEX-13111-1426-SM-5DUW3
50-59 years, male
384.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
384.0
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
379.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
370.5
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
368.6
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
362.5
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
360.8
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
359.8
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
358.7
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
357.8
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
346.7
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
344.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
344.4
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
338.9
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
336.5
GTEX-ZTSS-0926-SM-59865
40-49 years, male
335.1
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
331.8
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
328.8
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
327.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
324.2
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
316.6
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
314.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
313.4
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
312.6
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
306.0
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
303.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
297.0
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
296.3
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
295.5
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
293.8
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
291.7
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
288.6
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
287.8
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
280.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
279.1
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
269.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
263.6
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
263.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
260.9
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
254.0
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.