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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 909.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 366.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 390.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 937.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 536.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 798
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 642.4
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1087.1
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 944.6
Min RPKM: 27.0
Std RPKM: 166.9
Median RPKM: 260.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
944.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
814.9
GTEX-S32W-1926-SM-4AD63
50-59 years, female
739.9
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
737.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
718.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
663.3
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
616.3
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
596.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
590.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
588.3
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
579.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
577.4
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
563.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
559.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
536.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
502.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
468.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
459.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
459.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
451.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
447.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
428.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
412.5
GTEX-QESD-2026-SM-447BI
20-29 years, male
403.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
403.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
403.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
390.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
390.0
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
386.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
384.0
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
380.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
380.0
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
377.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
367.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
364.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
360.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
357.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
357.0
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
350.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
345.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
345.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
343.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
342.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
337.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
334.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
333.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
331.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
325.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
322.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
310.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
305.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
298.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
296.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
293.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
282.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
277.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
275.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
264.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
262.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
260.7
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
257.9
GTEX-S33H-1626-SM-4AD68
30-39 years, male
257.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
256.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
254.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
253.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
252.9
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
247.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
245.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
244.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
239.0
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
235.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
229.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
227.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
226.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
225.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
218.5
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
216.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
216.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
213.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
213.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
211.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
211.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
208.7
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
208.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
204.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
202.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
201.5
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
195.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
193.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
188.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
186.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
182.3
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
181.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
181.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
181.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
180.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
177.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
174.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
168.8
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
168.4
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
159.6
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
159.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
154.5
GTEX-RN64-1826-SM-48FDV
50-59 years, male
150.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
143.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
143.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
139.8
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
137.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
136.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
134.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
128.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
123.4
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
121.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
120.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
98.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
97.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
93.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
88.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
27.0
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.