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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 255.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 421.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 241.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 335.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 314.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 221.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 219.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 504.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 530.9
Min RPKM: 21.4
Std RPKM: 73.7
Median RPKM: 138.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
530.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
436.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
359.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
318.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
290.1
GTEX-R53T-0326-SM-48FEC
50-59 years, female
282.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
281.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
275.9
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
258.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
250.9
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
250.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
246.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
233.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
231.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
225.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
216.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
215.9
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
212.1
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
211.8
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
210.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
209.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
208.7
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
196.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
194.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
191.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
191.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
190.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
190.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
190.1
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
189.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
189.1
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
188.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
187.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
183.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
182.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
182.1
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
179.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
179.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
178.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
176.8
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
175.3
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
170.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
163.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
161.6
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
161.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
158.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
155.7
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
154.9
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
153.3
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
151.9
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
151.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
145.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
145.0
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
143.8
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
143.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
141.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
139.8
GTEX-RU72-1426-SM-46MUF
50-59 years, female
139.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
139.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
138.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
138.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
137.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
136.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
136.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
136.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
134.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
132.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
132.5
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
132.4
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
132.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
131.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
129.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
128.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
128.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
127.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
124.6
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
124.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
124.1
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
120.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
115.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
115.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
114.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
112.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
112.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
111.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
110.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
109.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
107.4
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
106.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
106.1
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
105.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
102.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
101.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
100.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
100.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
99.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
97.2
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
95.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
91.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
91.5
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
90.5
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
90.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
89.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
88.8
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
85.8
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
85.1
GTEX-RN64-1826-SM-48FDV
50-59 years, male
84.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
81.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
79.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
77.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
77.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
76.5
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
76.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
66.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
64.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
63.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
56.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
52.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
21.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.