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COLON - Expression summary
RNA expressioni
HPA:121.9TPM
GTEx:31.0RPKM
FANTOM5:125.2Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 121.9
overview Male, age 54 Sample 1
TPM: 141.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 138
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 202.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 79.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 116.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 85.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 165.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 102.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 103
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 132.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 130
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 122.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 65.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 31.0
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 17.1
Samples: 149

Max RPKM: 36.4
Min RPKM: 10.1
Std RPKM: 4.2
Median RPKM: 16.5
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 36.4
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 29.4
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 29.3
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 28.4
GTEX-V955-1726-SM-4JBHF 60-69 years, male 27.7
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 26.2
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 25.9
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 24.7
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 24.2
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 24.1
Show all
Colon - Transverse
RPKM: 41.5
Samples: 196

Max RPKM: 103.1
Min RPKM: 8.5
Std RPKM: 21.0
Median RPKM: 42.3
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 103.1
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 101.0
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 91.5
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 83.5
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 82.2
GTEX-139YR-2126-SM-5KM11 50-59 years, male 77.6
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 77.5
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 77.4
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 76.9
GTEX-YF7O-1726-SM-5IFJ9 50-59 years, male 76.8
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 125.2
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 111.7
FF:10014-101C5 62,83,84 years, mixed 125.2

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.