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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 749.7
Min RPKM: 142.6
Std RPKM: 126.3
Median RPKM: 391.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
749.7
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
709.5
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
667.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
631.0
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
618.8
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
610.8
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
596.1
GTEX-1192X-2526-SM-59868
50-59 years, male
593.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
580.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
530.4
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
529.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
526.9
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
513.7
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
513.4
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
507.1
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
506.1
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
504.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
504.0
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
501.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
500.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
500.2
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
486.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
486.5
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
467.9
GTEX-117YX-0326-SM-5GICL
50-59 years, male
464.9
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
457.1
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
454.7
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
454.5
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
452.4
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
449.4
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
445.2
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
440.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
429.5
GTEX-13111-1426-SM-5DUW3
50-59 years, male
427.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
424.2
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
423.1
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
420.8
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
419.6
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
416.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
410.6
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
404.4
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
403.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
400.0
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
391.8
GTEX-13113-1226-SM-5EGHT
60-69 years, female
391.0
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
389.8
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
385.9
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
380.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
378.8
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
357.4
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
356.7
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
354.4
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
352.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
345.6
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
344.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
344.8
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
331.1
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
330.1
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
328.9
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
325.9
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
323.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
315.8
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
312.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
307.7
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
306.4
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
300.3
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
299.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
298.6
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
297.2
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
296.5
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
290.4
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
286.3
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
280.9
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
279.8
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
277.7
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
264.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
253.0
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
252.3
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
250.9
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
247.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
223.8
GTEX-1122O-1326-SM-5H11F
60-69 years, female
201.4
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
195.9
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
193.5
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
191.3
GTEX-ZTSS-0926-SM-59865
40-49 years, male
184.1
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
172.8
GTEX-111YS-1426-SM-5GID8
60-69 years, male
142.6
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.