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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 590
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 157.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 194.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 485.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 542
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 538.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 357.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 513.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 322.7
Min RPKM: 63.4
Std RPKM: 44.2
Median RPKM: 152.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
322.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
294.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
280.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
278.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
239.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
236.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
230.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
220.2
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
220.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
216.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
213.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
211.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
210.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
207.0
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
206.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
203.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
201.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
201.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
201.0
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
200.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
198.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
197.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
197.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
196.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
195.2
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
193.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
192.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
186.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
185.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
185.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
184.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
181.6
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
179.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
178.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
177.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
177.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
176.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
175.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
175.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
175.1
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
171.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
171.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
171.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
171.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
170.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
169.8
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
168.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
164.8
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
163.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
162.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
162.9
GTEX-YECK-1926-SM-4W21H
60-69 years, male
162.6
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
161.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
161.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
158.2
GTEX-R53T-0326-SM-48FEC
50-59 years, female
156.4
GTEX-RN64-1826-SM-48FDV
50-59 years, male
155.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
153.6
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
152.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
152.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
151.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
150.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
150.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
149.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
149.0
GTEX-X261-1726-SM-4PQYT
50-59 years, male
148.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
147.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
144.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
144.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
143.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
143.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
142.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
142.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
142.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
141.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
141.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
140.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
138.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
138.5
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
136.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
136.5
GTEX-13112-1426-SM-5EGH8
50-59 years, male
134.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
133.9
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
131.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
131.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
131.0
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
127.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
127.0
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
125.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
125.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
125.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
125.3
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
125.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
124.5
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
124.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
123.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
122.8
GTEX-12696-0826-SM-5EGGE
60-69 years, male
122.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
121.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
118.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
115.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
115.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
113.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
112.6
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
112.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
112.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
111.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
111.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
111.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
109.9
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
109.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
107.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
105.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
105.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
92.9
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
83.3
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
73.5
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
73.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
63.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.