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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 1884.8
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 2383.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1441.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 2873.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 3442.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 2638.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 3199.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 3375.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2502.4
Min RPKM: 166.5
Std RPKM: 609.1
Median RPKM: 1087.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
2502.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
2477.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
2475.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
2372.4
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
2358.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
2340.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
2314.4
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
2233.2
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
2219.2
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
2218.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
2217.8
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
2203.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
2189.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
2173.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
2151.4
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
2081.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
1976.6
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
1920.0
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
1906.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
1898.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1888.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
1875.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
1851.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
1839.3
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
1837.2
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
1829.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
1792.8
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
1753.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
1708.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
1649.0
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
1622.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
1607.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
1584.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
1583.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
1568.1
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
1558.4
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
1546.5
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
1518.5
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
1470.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
1447.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
1377.6
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
1376.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
1375.4
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1338.0
GTEX-QESD-2026-SM-447BI
20-29 years, male
1303.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
1258.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
1250.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
1209.9
GTEX-S33H-1626-SM-4AD68
30-39 years, male
1203.5
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
1201.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
1177.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
1169.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
1164.6
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
1158.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
1157.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
1155.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
1151.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
1130.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
1127.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
1087.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
1047.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
1042.8
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
1041.0
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
1031.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
1015.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
1000.6
GTEX-RU72-1426-SM-46MUF
50-59 years, female
935.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
929.5
GTEX-REY6-1226-SM-48FDR
60-69 years, male
906.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
891.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
840.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
839.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
837.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
830.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
819.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
817.4
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
804.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
794.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
788.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
784.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
766.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
761.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
756.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
749.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
747.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
744.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
730.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
723.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
712.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
699.7
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
695.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
690.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
687.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
642.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
642.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
621.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
621.2
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
608.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
587.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
581.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
575.9
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
566.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
565.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
556.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
543.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
541.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
534.4
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
529.4
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
504.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
472.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
469.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
450.6
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
437.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
405.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
371.8
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
353.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
343.8
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
334.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
166.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.