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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 357.2
Min RPKM: 70.3
Std RPKM: 55.1
Median RPKM: 149.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
357.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
314.6
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
303.1
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
292.3
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
273.9
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
272.9
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
234.7
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
233.3
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
230.3
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
226.4
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
206.1
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
205.6
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
205.1
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
204.7
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
196.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
193.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
192.9
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
192.7
GTEX-117YX-0326-SM-5GICL
50-59 years, male
191.4
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
188.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
186.3
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
185.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
182.9
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
182.1
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
180.0
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
179.1
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
178.6
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
178.1
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
177.1
GTEX-1192X-2526-SM-59868
50-59 years, male
176.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
170.6
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
169.4
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
169.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
169.2
GTEX-ZTSS-0926-SM-59865
40-49 years, male
166.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
165.3
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
160.9
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
160.1
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
159.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
157.4
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
156.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
154.1
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
152.2
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
151.8
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
147.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
146.3
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
146.2
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
145.6
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
145.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
145.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
144.9
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
144.5
GTEX-13O61-1326-SM-5KM31
60-69 years, male
143.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
141.4
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
139.8
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
138.7
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
137.0
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
136.4
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
135.2
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
132.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
129.8
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
122.3
GTEX-13113-1226-SM-5EGHT
60-69 years, female
122.2
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
120.7
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
118.0
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
116.7
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
113.5
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
112.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
112.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
112.0
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
110.6
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
110.6
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
110.5
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
110.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
107.5
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
107.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
98.5
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
98.0
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
97.6
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
94.5
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
93.5
GTEX-111YS-1426-SM-5GID8
60-69 years, male
93.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
91.7
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
85.8
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
80.6
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
77.2
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
76.5
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
70.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.