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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 46.5
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 4.6
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 4.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 19.8
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 21
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 57
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 22.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 14.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 355.5
Min RPKM: 19.9
Std RPKM: 78.6
Median RPKM: 116.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
355.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
318.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
299.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
295.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
294.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
292.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
284.4
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
265.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
261.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
261.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
252.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
250.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
248.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
243.9
GTEX-11GSP-0626-SM-5986T
60-69 years, female
243.8
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
238.9
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
237.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
230.9
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
225.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
221.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
218.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
218.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
218.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
205.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
204.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
199.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
196.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
196.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
194.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
193.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
183.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
181.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
180.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
167.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
166.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
163.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
161.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
160.7
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
157.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
153.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
151.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
151.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
151.2
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
149.3
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
147.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
145.9
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
145.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
143.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
140.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
139.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
131.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
130.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
128.3
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
126.8
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
125.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
125.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
122.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
121.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
119.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
116.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
116.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
114.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
110.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
110.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
109.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
106.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
104.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
100.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
97.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
97.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
94.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
93.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
88.0
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
87.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
87.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
86.0
GTEX-13113-1326-SM-5GCOI
60-69 years, female
84.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
84.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
82.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
82.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
81.9
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
79.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
79.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
77.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
73.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
70.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
69.6
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
68.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
66.8
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
66.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
65.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
65.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
64.1
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
62.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
61.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
60.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
58.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
56.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
54.1
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
53.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
52.2
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
49.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
48.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
45.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
45.4
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
45.3
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
44.9
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
42.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
40.3
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
38.9
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
36.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
36.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
31.8
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
31.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
31.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
29.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
24.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
22.6
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
19.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.