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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 716.1
Min RPKM: 142.8
Std RPKM: 108.1
Median RPKM: 293.8
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
716.1
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
597.1
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
586.4
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
540.9
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
510.4
GTEX-1192X-2526-SM-59868
50-59 years, male
485.2
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
465.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
457.9
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
454.2
GTEX-13O61-1326-SM-5KM31
60-69 years, male
453.8
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
453.2
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
447.3
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
429.1
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
427.8
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
418.7
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
411.0
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
403.7
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
402.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
395.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
390.1
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
378.2
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
374.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
368.8
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
367.5
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
366.6
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
363.0
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
356.7
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
356.7
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
349.5
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
342.0
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
340.7
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
340.5
GTEX-13111-1426-SM-5DUW3
50-59 years, male
339.3
GTEX-13113-1226-SM-5EGHT
60-69 years, female
339.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
332.6
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
332.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
326.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
323.1
GTEX-117YX-0326-SM-5GICL
50-59 years, male
319.9
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
319.5
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
313.0
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
311.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
311.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
302.2
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
285.3
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
284.9
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
284.7
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
283.2
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
282.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
280.6
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
279.6
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
278.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
278.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
275.6
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
274.6
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
273.0
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
266.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
265.5
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
255.7
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
254.1
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
248.2
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
247.8
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
246.4
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
245.9
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
243.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
242.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
242.7
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
239.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
236.2
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
229.3
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
227.4
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
221.9
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
220.6
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
218.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
217.7
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
208.7
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
208.0
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
199.4
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
185.3
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
180.2
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
176.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
172.7
GTEX-1122O-1326-SM-5H11F
60-69 years, female
167.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
167.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
164.4
GTEX-ZTSS-0926-SM-59865
40-49 years, male
164.0
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
155.0
GTEX-111YS-1426-SM-5GID8
60-69 years, male
142.8
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.