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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 328.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 306.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 284.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 364.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 237.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 322.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 245.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 557.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 254.1
Min RPKM: 0.2
Std RPKM: 61.4
Median RPKM: 63.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
254.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
234.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
214.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
198.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
198.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
194.7
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
188.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
187.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
186.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
182.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
179.5
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
166.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
161.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
161.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
161.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
160.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
148.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
146.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
145.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
141.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
137.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
135.0
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
134.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
128.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
127.9
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
120.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
115.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
112.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
108.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
108.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
107.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
107.0
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
106.8
GTEX-YECK-1926-SM-4W21H
60-69 years, male
104.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
99.1
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
98.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
97.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
94.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
93.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
92.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
88.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
88.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
87.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
87.0
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
84.7
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
83.6
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
82.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
82.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
81.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
80.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
75.7
GTEX-11GSP-0626-SM-5986T
60-69 years, female
75.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
73.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
73.1
GTEX-11ZUS-2526-SM-59872
30-39 years, male
72.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
71.9
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
69.5
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
69.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
63.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
63.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
63.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
59.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
58.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
57.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
56.8
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
56.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
49.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
47.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
43.9
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
41.4
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
40.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
38.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
37.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
37.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
35.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
33.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
32.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
30.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
25.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
25.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
25.3
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
24.0
GTEX-X261-1726-SM-4PQYT
50-59 years, male
24.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
23.0
GTEX-REY6-1226-SM-48FDR
60-69 years, male
22.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
22.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
21.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
20.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
20.1
GTEX-QEL4-1226-SM-447A4
50-59 years, male
19.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
17.7
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
17.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
15.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
15.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
14.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
13.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
13.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
13.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
12.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
11.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
11.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
11.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
11.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
9.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
9.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
8.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
7.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
7.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
6.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
6.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
5.6
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
5.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
5.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
3.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
3.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
3.3
GTEX-S32W-1926-SM-4AD63
50-59 years, female
2.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
1.9
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
0.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.