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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 279.1
Min RPKM: 9.5
Std RPKM: 72.3
Median RPKM: 119.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
279.1
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
271.7
GTEX-1122O-1326-SM-5H11F
60-69 years, female
268.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
252.1
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
233.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
224.3
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
222.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
220.5
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
210.4
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
206.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
205.3
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
204.9
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
204.6
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
200.9
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
199.9
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
198.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
191.8
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
187.6
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
186.3
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
185.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
183.5
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
179.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
178.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
173.5
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
172.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
166.1
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
163.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
161.1
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
159.1
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
158.9
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
158.4
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
157.7
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
153.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
151.6
GTEX-13113-1226-SM-5EGHT
60-69 years, female
151.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
147.6
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
147.5
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
145.9
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
138.5
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
132.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
128.2
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
124.9
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
123.2
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
122.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
116.8
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
114.1
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
112.8
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
112.2
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
111.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
105.8
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
103.0
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
95.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
91.9
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
91.7
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
90.6
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
87.7
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
82.4
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
79.2
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
76.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
73.0
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
69.5
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
66.7
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
65.8
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
62.8
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
59.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
55.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
52.9
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
49.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
45.6
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
45.4
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
43.2
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
41.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
37.8
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
36.4
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
36.2
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
35.0
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
27.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
26.7
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
24.9
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
20.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
17.7
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
17.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
15.8
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
13.5
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
11.8
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
11.3
GTEX-117YX-0326-SM-5GICL
50-59 years, male
9.5
GTEX-1192X-2526-SM-59868
50-59 years, male
9.5
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.