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COLON - Expression summary
RNA expressioni
HPA:3.5TPM
GTEx:7.4RPKM
FANTOM5:33.7Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 3.5
overview Male, age 54 Sample 1
TPM: 2.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 3.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 3.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 2.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 7.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 3.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 5.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 4.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 7.4
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 11.1
Samples: 149

Max RPKM: 27.8
Min RPKM: 2.1
Std RPKM: 4.2
Median RPKM: 10.8
GTEX-13OW8-2726-SM-5L3FZ 60-69 years, male 27.8
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 27.6
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 23.1
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 22.4
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 19.2
GTEX-12BJ1-2026-SM-5FQUH 60-69 years, male 18.7
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 18.2
GTEX-13111-1926-SM-5GCOL 50-59 years, male 17.6
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 17.4
GTEX-13QBU-2026-SM-5KLZB 40-49 years, female 17.3
Show all
Colon - Transverse
RPKM: 4.6
Samples: 196

Max RPKM: 18.3
Min RPKM: 0.1
Std RPKM: 4.6
Median RPKM: 2.9
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 18.3
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 18.3
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 16.7
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 16.5
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 15.6
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 15.6
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 15.2
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 14.9
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 14.6
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 14.4
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 33.7
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 33.5
FF:10014-101C5 62,83,84 years, mixed 33.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.