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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 416.4
Min RPKM: 61.2
Std RPKM: 62.7
Median RPKM: 165.4
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
416.4
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
388.1
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
295.4
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
289.2
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
278.0
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
275.9
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
275.2
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
271.0
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
266.0
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
259.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
254.2
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
253.0
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
250.4
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
250.2
GTEX-1192X-2526-SM-59868
50-59 years, male
247.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
247.4
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
239.3
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
235.5
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
229.6
GTEX-13111-1426-SM-5DUW3
50-59 years, male
227.5
GTEX-13O61-1326-SM-5KM31
60-69 years, male
227.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
217.1
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
216.5
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
216.2
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
212.6
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
210.8
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
208.2
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
207.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
206.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
204.9
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
202.0
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
201.4
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
193.1
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
190.7
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
190.2
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
189.6
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
189.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
184.8
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
184.5
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
179.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
176.6
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
173.3
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
168.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
167.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
163.8
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
162.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
162.3
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
162.1
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
160.8
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
160.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
159.1
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
157.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
155.7
GTEX-13113-1226-SM-5EGHT
60-69 years, female
153.8
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
153.4
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
147.7
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
146.9
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
146.6
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
146.5
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
145.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
144.7
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
143.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
143.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
140.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
139.8
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
137.4
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
135.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
134.6
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
133.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
133.5
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
132.1
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
126.4
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
122.1
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
120.3
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
118.8
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
118.1
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
114.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
113.9
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
111.5
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
111.1
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
110.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
109.8
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
106.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
106.1
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
106.1
GTEX-1122O-1326-SM-5H11F
60-69 years, female
100.8
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
97.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
61.2
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.