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SMARCD2
COLON - Expression summary
RNA expressioni
HPA:43.2TPM
GTEx:29.1RPKM
FANTOM5:42.6Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 43.2
overview Male, age 54 Sample 1
TPM: 42.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 41
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 35.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 39.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 27.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 41
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 59.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 45.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 41
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 58.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 46.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 50.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 33.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 29.1
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 29.9
Samples: 149

Max RPKM: 54.6
Min RPKM: 8.2
Std RPKM: 8.0
Median RPKM: 29.9
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 54.6
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 47.6
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 47.6
GTEX-13D11-0626-SM-5LZYY 50-59 years, female 46.8
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 45.7
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 45.3
GTEX-145MO-2626-SM-5QGPD 60-69 years, male 44.2
GTEX-ZYFG-1826-SM-5GZWX 60-69 years, female 44.2
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 42.3
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 42.3
Show all
Colon - Transverse
RPKM: 28.5
Samples: 196

Max RPKM: 50.7
Min RPKM: 12.5
Std RPKM: 6.2
Median RPKM: 27.9
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 50.7
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 47.8
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 43.8
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 42.6
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 42.0
GTEX-1128S-1626-SM-5H12O 60-69 years, female 41.4
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 41.2
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 40.6
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 40.0
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 40.0
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 42.6
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 34.3
FF:10014-101C5 62,83,84 years, mixed 42.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.