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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 420.9
Min RPKM: 139.7
Std RPKM: 56.3
Median RPKM: 218.7
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
420.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
397.8
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
350.1
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
347.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
328.4
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
326.3
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
320.4
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
302.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
298.4
GTEX-13111-1426-SM-5DUW3
50-59 years, male
298.1
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
295.6
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
287.4
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
286.2
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
284.5
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
284.1
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
281.9
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
278.4
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
275.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
268.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
267.8
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
266.6
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
264.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
258.3
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
258.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
251.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
249.4
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
247.9
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
247.3
GTEX-1192X-2526-SM-59868
50-59 years, male
246.0
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
246.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
242.9
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
242.7
GTEX-13O61-1326-SM-5KM31
60-69 years, male
242.6
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
237.6
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
235.8
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
235.4
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
231.4
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
230.4
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
229.2
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
226.3
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
222.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
221.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
220.8
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
219.3
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
218.1
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
213.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
211.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
209.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
209.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
209.0
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
207.8
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
204.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
204.1
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
203.3
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
202.2
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
202.0
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
200.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
200.1
GTEX-1122O-1326-SM-5H11F
60-69 years, female
199.5
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
194.4
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
191.3
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
190.3
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
188.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
187.4
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
181.3
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
180.6
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
178.3
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
178.1
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
177.3
GTEX-ZTSS-0926-SM-59865
40-49 years, male
176.8
GTEX-13113-1226-SM-5EGHT
60-69 years, female
176.0
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
175.3
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
174.5
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
174.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
172.1
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
171.7
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
171.3
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
169.3
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
169.3
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
168.5
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
167.0
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
160.9
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
159.3
GTEX-111YS-1426-SM-5GID8
60-69 years, male
156.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
156.4
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
155.2
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
142.9
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
139.7
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.