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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1270.8
Min RPKM: 235.3
Std RPKM: 201.8
Median RPKM: 547.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
1270.8
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
1081.7
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
1067.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
953.2
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
951.8
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
935.9
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
925.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
859.8
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
848.5
GTEX-13O61-1326-SM-5KM31
60-69 years, male
846.3
GTEX-1192X-2526-SM-59868
50-59 years, male
840.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
836.9
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
829.1
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
828.1
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
826.0
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
807.0
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
781.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
763.9
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
763.6
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
754.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
736.0
GTEX-117YX-0326-SM-5GICL
50-59 years, male
725.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
719.5
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
713.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
711.5
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
680.3
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
673.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
671.6
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
649.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
643.2
GTEX-13111-1426-SM-5DUW3
50-59 years, male
642.4
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
638.3
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
630.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
618.7
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
618.3
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
605.6
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
602.7
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
601.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
600.8
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
589.2
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
578.2
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
574.4
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
563.0
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
547.4
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
547.3
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
545.5
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
544.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
544.4
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
539.4
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
531.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
522.3
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
520.2
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
511.1
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
505.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
503.7
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
501.0
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
496.0
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
490.6
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
484.6
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
483.7
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
469.1
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
468.6
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
465.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
461.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
455.8
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
448.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
447.2
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
446.5
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
444.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
438.4
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
418.2
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
417.2
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
411.3
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
395.3
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
391.6
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
390.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
390.1
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
369.1
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
361.7
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
342.9
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
334.8
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
322.7
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
321.6
GTEX-ZTSS-0926-SM-59865
40-49 years, male
307.1
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
303.1
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
295.3
GTEX-1122O-1326-SM-5H11F
60-69 years, female
292.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
235.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.