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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 630.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 292
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 360.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 625.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 595.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 929
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 573.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 839.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 625.2
Min RPKM: 81.7
Std RPKM: 79.4
Median RPKM: 257.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
625.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
541.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
522.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
515.1
GTEX-12696-0826-SM-5EGGE
60-69 years, male
482.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
450.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
414.6
GTEX-REY6-1226-SM-48FDR
60-69 years, male
381.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
379.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
376.9
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
360.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
354.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
345.6
GTEX-QESD-2026-SM-447BI
20-29 years, male
341.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
339.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
334.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
332.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
331.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
329.8
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
326.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
325.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
319.9
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
316.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
308.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
306.0
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
304.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
302.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
302.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
299.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
299.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
299.3
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
298.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
295.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
292.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
290.9
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
290.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
287.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
285.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
282.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
279.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
278.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
278.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
278.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
272.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
272.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
272.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
271.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
270.7
GTEX-S33H-1626-SM-4AD68
30-39 years, male
270.5
GTEX-13113-1326-SM-5GCOI
60-69 years, female
269.0
GTEX-P78B-1326-SM-3P611
40-49 years, female
268.7
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
267.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
265.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
263.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
261.9
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
261.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
261.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
261.0
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
259.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
257.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
257.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
257.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
256.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
255.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
254.8
GTEX-YECK-1926-SM-4W21H
60-69 years, male
253.7
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
253.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
251.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
251.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
251.1
GTEX-Q734-0326-SM-48U15
40-49 years, female
248.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
248.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
245.8
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
245.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
243.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
242.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
242.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
242.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
240.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
237.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
236.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
234.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
233.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
233.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
233.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
231.5
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
231.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
230.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
229.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
229.7
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
229.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
229.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
227.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
225.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
218.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
218.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
216.1
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
213.6
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
213.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
207.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
205.0
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
204.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
204.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
201.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
197.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
196.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
194.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
193.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
193.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
192.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
187.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
178.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
174.8
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
167.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
164.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
162.0
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
155.7
GTEX-11GSP-0626-SM-5986T
60-69 years, female
141.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
81.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.