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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2103.8
Min RPKM: 4.5
Std RPKM: 503.3
Median RPKM: 315.2
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
2103.8
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
1935.7
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
1764.4
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
1671.9
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
1632.4
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
1604.8
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
1572.9
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
1507.8
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
1360.6
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
1315.9
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
1296.8
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
1232.9
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
1189.3
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
1093.5
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
1072.2
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
1038.1
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
960.3
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
947.0
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
870.2
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
821.6
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
810.6
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
742.5
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
729.4
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
711.8
GTEX-QCQG-1226-SM-48U23
50-59 years, female
710.7
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
659.7
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
651.7
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
605.7
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
594.2
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
588.8
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
577.0
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
554.5
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
551.7
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
541.1
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
539.5
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
478.3
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
454.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
450.9
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
449.2
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
414.9
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
409.4
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
355.9
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
348.5
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
348.0
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
346.8
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
342.0
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
336.8
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
324.1
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
306.4
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
304.2
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
295.0
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
294.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
277.6
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
269.5
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
268.8
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
250.0
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
239.1
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
232.5
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
226.1
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
217.1
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
208.1
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
203.8
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
202.7
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
193.7
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
190.8
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
189.3
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
181.0
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
174.3
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
160.9
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
156.5
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
140.8
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
117.1
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
109.7
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
107.4
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
102.9
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
100.3
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
97.7
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
97.7
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
93.7
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
84.9
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
72.0
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
61.8
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
46.2
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
43.3
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
35.2
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
32.8
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
31.8
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
24.0
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
21.3
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
18.6
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
16.4
GTEX-11I78-2026-SM-5987C
50-59 years, female
13.5
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
13.0
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
12.4
GTEX-S341-1226-SM-4AD5S
40-49 years, female
5.5
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
4.5
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.