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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 47.3
Min RPKM: 1.5
Std RPKM: 9.1
Median RPKM: 12.7
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
47.3
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
42.7
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
37.8
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
34.6
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
34.4
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
31.5
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
29.2
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
28.4
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
26.6
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
25.7
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
25.7
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
25.4
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
25.4
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
24.9
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
24.3
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
23.5
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
23.3
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
22.9
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
22.3
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
21.7
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
21.7
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
21.5
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
20.9
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
20.4
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
20.4
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
20.3
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
19.7
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
19.2
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
18.3
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
18.2
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
17.8
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
17.6
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
17.6
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
17.5
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
17.4
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
17.2
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
16.3
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
15.5
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
15.1
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
14.8
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
14.7
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
14.4
GTEX-QCQG-1226-SM-48U23
50-59 years, female
14.3
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
14.2
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
13.2
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
13.1
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
13.1
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
12.8
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
12.7
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
12.6
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
12.4
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
11.9
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
11.8
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
11.7
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
11.6
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
11.6
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
11.4
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
11.3
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
11.3
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
11.2
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
11.1
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
11.1
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
10.9
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
10.7
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
10.6
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
9.9
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
9.4
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
9.2
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
9.0
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
8.7
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
8.7
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
8.5
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
7.1
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
6.8
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
6.7
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
6.4
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
6.4
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
6.0
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
5.9
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
5.9
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
5.7
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
5.5
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
5.3
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
5.2
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
5.2
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
5.2
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
5.0
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
4.8
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
4.6
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
4.3
GTEX-S341-1226-SM-4AD5S
40-49 years, female
4.2
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
4.0
GTEX-11I78-2026-SM-5987C
50-59 years, female
3.3
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
2.0
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
1.9
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
1.5
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.