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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 222.8
Min RPKM: 35.4
Std RPKM: 39.5
Median RPKM: 129.8
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
222.8
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
219.9
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
212.5
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
198.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
195.2
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
193.2
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
191.3
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
185.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
185.0
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
181.2
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
175.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
174.9
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
173.6
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
170.5
GTEX-13113-1226-SM-5EGHT
60-69 years, female
165.8
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
165.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
163.6
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
160.7
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
158.6
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
158.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
158.0
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
155.3
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
152.8
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
151.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
150.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
149.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
148.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
146.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
146.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
144.1
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
141.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
139.8
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
138.7
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
138.6
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
137.0
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
136.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
133.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
133.0
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
132.4
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
132.4
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
132.3
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
131.3
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
131.1
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
130.1
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
129.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
129.2
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
127.7
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
127.3
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
127.0
GTEX-1122O-1326-SM-5H11F
60-69 years, female
126.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
126.6
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
126.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
125.2
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
125.1
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
123.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
123.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
122.6
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
118.9
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
116.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
115.8
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
114.6
GTEX-13111-1426-SM-5DUW3
50-59 years, male
113.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
112.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
111.5
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
111.5
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
111.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
110.0
GTEX-1192X-2526-SM-59868
50-59 years, male
108.2
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
106.4
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
102.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
102.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
101.0
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
98.5
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
97.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
96.7
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
95.2
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
93.2
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
92.2
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
88.1
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
70.9
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
62.8
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
61.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
60.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
55.9
GTEX-117YX-0326-SM-5GICL
50-59 years, male
46.3
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
43.3
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
41.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
35.4
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.