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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 644
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 678.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 475.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 896.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 713
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1217.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 718.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1101.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 640.6
Min RPKM: 48.4
Std RPKM: 110.1
Median RPKM: 372.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
640.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
628.9
GTEX-R53T-0326-SM-48FEC
50-59 years, female
621.3
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
598.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
564.7
GTEX-Q734-0326-SM-48U15
40-49 years, female
558.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
555.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
529.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
519.1
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
518.8
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
517.0
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
499.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
494.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
492.9
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
492.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
489.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
488.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
483.0
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
478.8
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
476.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
475.7
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
474.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
473.7
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
469.9
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
467.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
466.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
455.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
447.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
442.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
442.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
441.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
431.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
427.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
424.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
421.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
418.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
415.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
413.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
413.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
411.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
410.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
410.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
409.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
408.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
408.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
406.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
405.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
404.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
400.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
398.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
395.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
392.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
390.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
386.0
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
384.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
383.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
374.2
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
373.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
373.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
372.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
354.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
354.6
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
350.8
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
349.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
348.4
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
347.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
335.6
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
334.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
334.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
330.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
326.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
324.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
320.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
317.9
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
314.3
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
313.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
313.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
313.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
312.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
311.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
309.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
306.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
299.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
297.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
295.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
292.8
GTEX-QEL4-1226-SM-447A4
50-59 years, male
291.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
289.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
288.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
286.3
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
284.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
283.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
282.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
282.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
274.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
265.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
264.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
262.5
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
261.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
257.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
251.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
248.9
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
248.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
245.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
244.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
244.3
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
239.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
239.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
239.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
220.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
220.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
213.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
210.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
201.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
182.7
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
167.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
164.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
128.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
48.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.