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COLON - Expression summary
RNA expressioni
HPA:91.4TPM
GTEx:84.5RPKM
FANTOM5:108.4Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 91.4
overview Male, age 54 Sample 1
TPM: 121.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 151.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 52.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 127.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 109.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 90.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 90.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 37
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 70.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 48.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 81.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 127.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 79.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 84.5
GTEx sample id Sample description RPKM
83.0112.3138.444.8210.9020406080100120140160180200220
Colon - Sigmoid
RPKM: 113.5
Samples: 149

Max RPKM: 222.3
Min RPKM: 44.8
Std RPKM: 36.4
Median RPKM: 112.3
GTEX-145LS-2926-SM-5O99G 60-69 years, female 222.3
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 210.9
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 200.0
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 183.7
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 181.8
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 181.0
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 178.7
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 175.2
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 175.0
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 173.1
Show all
33.152.181.89.7147.7020406080100120140160180
Colon - Transverse
RPKM: 62.4
Samples: 196

Max RPKM: 196.7
Min RPKM: 9.7
Std RPKM: 38.3
Median RPKM: 52.1
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 196.7
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 176.7
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 176.2
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 165.0
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 160.4
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 154.9
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 147.7
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 141.3
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 140.0
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 136.3
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 108.4
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 79.5
FF:10014-101C5 62,83,84 years, mixed 108.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.