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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 187.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 43.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 35.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 117.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 123.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 153.1
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 115.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 263.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 473.3
Min RPKM: 50.7
Std RPKM: 79.4
Median RPKM: 231.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
473.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
438.2
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
435.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
427.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
419.8
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
414.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
402.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
398.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
389.1
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
386.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
369.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
360.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
358.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
344.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
336.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
334.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
328.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
325.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
325.5
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
324.3
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
316.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
311.1
GTEX-P78B-1326-SM-3P611
40-49 years, female
302.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
291.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
289.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
289.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
289.1
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
285.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
284.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
281.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
280.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
280.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
278.9
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
277.0
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
275.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
274.3
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
269.2
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
267.3
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
260.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
260.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
259.2
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
259.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
258.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
251.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
249.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
245.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
244.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
243.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
241.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
240.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
239.1
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
238.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
238.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
238.6
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
236.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
235.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
234.8
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
234.1
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
232.0
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
231.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
230.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
229.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
225.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
225.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
223.4
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
217.5
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
214.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
214.3
GTEX-RN64-1826-SM-48FDV
50-59 years, male
212.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
212.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
210.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
210.6
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
210.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
207.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
206.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
205.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
205.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
203.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
203.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
197.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
197.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
195.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
195.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
194.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
192.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
192.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
188.9
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
188.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
188.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
186.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
186.3
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
184.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
181.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
179.9
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
176.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
176.5
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
176.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
174.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
171.9
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
170.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
169.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
164.2
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
163.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
163.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
161.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
161.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
160.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
158.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
153.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
149.9
GTEX-11GSP-0626-SM-5986T
60-69 years, female
145.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
144.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
139.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
139.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
136.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
118.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
114.8
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
89.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
50.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.