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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 5786.8
Min RPKM: 178.5
Std RPKM: 846.7
Median RPKM: 1358.0
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
5786.8
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
3570.6
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
3158.9
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
2881.6
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
2841.9
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
2576.6
GTEX-11I78-2026-SM-5987C
50-59 years, female
2526.3
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
2399.8
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
2384.4
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
2377.4
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
2276.7
GTEX-S341-1226-SM-4AD5S
40-49 years, female
2265.4
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
2237.7
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
2146.5
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
2129.2
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
2109.4
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
2087.2
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
2069.4
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
2046.8
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
2035.1
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
1963.5
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
1932.4
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
1916.3
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
1874.6
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
1832.5
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
1798.3
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
1794.7
GTEX-QCQG-1226-SM-48U23
50-59 years, female
1752.9
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
1742.3
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
1740.3
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
1654.4
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
1647.3
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
1630.0
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
1579.3
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
1569.3
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
1569.2
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
1548.9
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
1522.2
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
1503.6
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
1477.3
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
1475.4
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
1473.6
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
1440.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
1425.2
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
1401.3
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
1394.3
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
1388.7
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
1367.0
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
1349.1
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
1289.5
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
1280.4
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
1264.3
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
1207.0
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
1179.6
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
1163.7
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
1157.7
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
1138.3
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
1102.8
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
1078.1
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
1002.1
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
976.9
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
967.0
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
945.4
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
934.9
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
932.3
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
913.0
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
845.1
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
843.5
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
829.7
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
775.6
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
775.3
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
751.0
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
723.9
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
698.7
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
624.8
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
624.6
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
622.3
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
600.7
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
600.0
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
592.0
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
566.0
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
539.7
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
510.4
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
507.9
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
500.7
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
500.5
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
491.2
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
468.5
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
445.7
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
427.8
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
408.0
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
367.6
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
327.0
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
321.8
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
256.7
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
178.5
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.